- Author:
- napakalas <yuda.munarko@gmail.com>
- Date:
- 2023-04-06 10:35:17+12:00
- Desc:
- replace files wit the publlished version
- Permanent Source URI:
- https://models.fieldml.org/workspace/ae0/rawfile/e25fbad7b3aa71aed73eb58bae6d721ed954a2db/Transporter 2.cellml
<?xml version='1.0' encoding='UTF-8'?>
<model cmeta:id="metaid0" name="ssFlux" xmlns="http://www.cellml.org/cellml/1.1#" xmlns:cellml="http://www.cellml.org/cellml/1.1#" xmlns:cmeta="http://www.cellml.org/metadata/1.0#">
<units name="fmol_per_L_per_sec">
<unit units="fmol_per_L"/>
<unit exponent="-1.0" units="second"/>
</units>
<units name="C_per_mol">
<unit units="coulomb"/>
<unit exponent="-1.0" units="mole"/>
</units>
<units name="fC">
<unit prefix="femto" units="coulomb"/>
</units>
<units name="per_sec">
<unit exponent="-1.0" units="second"/>
</units>
<units name="uM_per_sec">
<unit exponent="-1.0" units="second"/>
<unit units="uM"/>
</units>
<units name="J_per_K_per_mol">
<unit units="joule"/>
<unit exponent="-1.0" units="kelvin"/>
<unit exponent="-1.0" units="mole"/>
</units>
<units name="fmol_per_sec">
<unit exponent="-1.0" units="second"/>
<unit units="fmol"/>
</units>
<units name="fmol">
<unit prefix="femto" units="mole"/>
</units>
<units name="J_per_mol">
<unit exponent="-1.0" units="mole"/>
<unit units="joule"/>
</units>
<units name="fS">
<unit prefix="femto" units="siemens"/>
</units>
<units name="per_sec_per_fmol_per_L">
<unit exponent="-1.0" units="second"/>
<unit exponent="-1.0" units="fmol_per_L"/>
</units>
<units name="fmol_per_L">
<unit exponent="-1.0" units="litre"/>
<unit prefix="femto" units="mole"/>
</units>
<units name="fF">
<unit prefix="femto" units="farad"/>
</units>
<units name="uM">
<unit prefix="micro" units="mole"/>
<unit exponent="-1.0" units="litre"/>
</units>
<units name="mM_per_sec">
<unit exponent="-1.0" units="second"/>
<unit units="mM"/>
</units>
<units name="per_fmol">
<unit exponent="-1.0" units="fmol"/>
</units>
<units name="pL">
<unit prefix="pico" units="litre"/>
</units>
<units name="fA">
<unit prefix="femto" units="ampere"/>
</units>
<units name="mM">
<unit prefix="milli" units="mole"/>
<unit exponent="-1.0" units="litre"/>
</units>
<component name="main">
<variable cmeta:id="main.R" initial_value="8.31" name="R" units="J_per_K_per_mol"/>
<variable cmeta:id="main.T" initial_value="279.45" name="T" units="kelvin"/>
<variable cmeta:id="main.F" initial_value="96485" name="F" units="C_per_mol"/>
<variable cmeta:id="main.t" initial_value="0" name="t" units="second"/>
<variable cmeta:id="main.K_Ai" initial_value="1" name="K_Ai" units="per_fmol"/>
<variable cmeta:id="main.q_Ai" initial_value="2" name="q_Ai" units="fmol"/>
<variable cmeta:id="main.K_Ao" initial_value="5" name="K_Ao" units="per_fmol"/>
<variable cmeta:id="main.q_Ao" initial_value="150" name="q_Ao" units="fmol"/>
<variable cmeta:id="main.K_Ei" initial_value="3" name="K_Ei" units="per_fmol"/>
<variable cmeta:id="main.q_Ei" initial_value="0" name="q_Ei" units="fmol"/>
<variable cmeta:id="main.K_Eo" initial_value="12" name="K_Eo" units="per_fmol"/>
<variable cmeta:id="main.q_Eo" initial_value="0" name="q_Eo" units="fmol"/>
<variable cmeta:id="main.K_EAi" initial_value="15" name="K_EAi" units="per_fmol"/>
<variable cmeta:id="main.q_EAi" initial_value="0.2" name="q_EAi" units="fmol"/>
<variable cmeta:id="main.K_EAo" initial_value="5" name="K_EAo" units="per_fmol"/>
<variable cmeta:id="main.q_EAo" initial_value="0.9" name="q_EAo" units="fmol"/>
<variable cmeta:id="main.kappa_Re1" initial_value="4" name="kappa_Re1" units="fmol_per_sec"/>
<variable cmeta:id="main.kappa_Re2" initial_value="5" name="kappa_Re2" units="fmol_per_sec"/>
<variable cmeta:id="main.kappa_Re3" initial_value="7" name="kappa_Re3" units="fmol_per_sec"/>
<variable cmeta:id="main.kappa_Re4" initial_value="9" name="kappa_Re4" units="fmol_per_sec"/>
<variable cmeta:id="main.k1f" name="k1f" units="per_sec"/>
<variable cmeta:id="main.k1r" name="k1r" units="per_sec"/>
<variable cmeta:id="main.k2f" name="k2f" units="per_sec"/>
<variable cmeta:id="main.k2r" name="k2r" units="per_sec"/>
<variable cmeta:id="main.k3f" name="k3f" units="per_sec"/>
<variable cmeta:id="main.k3r" name="k3r" units="per_sec"/>
<variable cmeta:id="main.k4f" name="k4f" units="per_sec"/>
<variable cmeta:id="main.k4r" name="k4r" units="per_sec"/>
<variable cmeta:id="main.P1" name="P1" units="dimensionless"/>
<variable cmeta:id="main.P2" name="P2" units="dimensionless"/>
<variable cmeta:id="main.P3" name="P3" units="dimensionless"/>
<variable cmeta:id="main.P4" name="P4" units="dimensionless"/>
<variable cmeta:id="main.P5" name="P5" units="dimensionless"/>
<variable cmeta:id="main.P6" name="P6" units="dimensionless"/>
<variable cmeta:id="main.X" initial_value="0" name="X" units="dimensionless"/>
<variable cmeta:id="main.E" name="E" units="fmol"/>
<variable cmeta:id="main.v" name="v" units="fmol_per_sec"/>
<math xmlns="http://www.w3.org/1998/Math/MathML">
<apply>
<eq/>
<ci>k1f</ci>
<apply>
<times/>
<ci>kappa_Re1</ci>
<ci>K_EAi</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>k1r</ci>
<apply>
<times/>
<ci>kappa_Re1</ci>
<ci>K_Ai</ci>
<ci>K_Ei</ci>
<cn cellml:units="fmol">1</cn>
</apply>
</apply>
<apply>
<eq/>
<ci>k2f</ci>
<apply>
<times/>
<ci>kappa_Re2</ci>
<ci>K_Ao</ci>
<ci>K_EAi</ci>
<cn cellml:units="fmol">1</cn>
</apply>
</apply>
<apply>
<eq/>
<ci>k2r</ci>
<apply>
<times/>
<ci>kappa_Re2</ci>
<ci>K_Ai</ci>
<ci>K_EAo</ci>
<cn cellml:units="fmol">1</cn>
</apply>
</apply>
<apply>
<eq/>
<ci>k3f</ci>
<apply>
<times/>
<ci>kappa_Re3</ci>
<ci>K_Ei</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>k3r</ci>
<apply>
<times/>
<ci>kappa_Re3</ci>
<ci>K_Eo</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>k4f</ci>
<apply>
<times/>
<ci>kappa_Re4</ci>
<ci>K_EAo</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>k4r</ci>
<apply>
<times/>
<ci>kappa_Re4</ci>
<ci>K_EAi</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>E</ci>
<apply>
<plus/>
<ci>q_Ei</ci>
<ci>q_Eo</ci>
<ci>q_EAi</ci>
<ci>q_EAo</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>P1</ci>
<apply>
<times/>
<ci>k1f</ci>
<ci>k2f</ci>
<ci>k3f</ci>
<ci>k4f</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>P2</ci>
<apply>
<times/>
<ci>k1r</ci>
<ci>k2r</ci>
<ci>k3r</ci>
<ci>k4r</ci>
</apply>
</apply>
<apply>
<eq/>
<ci>P3</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>k1f</ci>
<ci>k3f</ci>
<ci>k4f</ci>
</apply>
<apply>
<times/>
<ci>k1f</ci>
<ci>k3f</ci>
<ci>k2r</ci>
</apply>
<apply>
<times/>
<ci>k1f</ci>
<ci>k4f</ci>
<ci>k3r</ci>
</apply>
<apply>
<times/>
<ci>k1f</ci>
<ci>k2r</ci>
<ci>k3r</ci>
</apply>
<apply>
<times/>
<ci>k3f</ci>
<ci>k2r</ci>
<ci>k4r</ci>
</apply>
<apply>
<times/>
<ci>k2r</ci>
<ci>k3r</ci>
<ci>k4r</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>P4</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>k1f</ci>
<ci>k2f</ci>
<ci>k3f</ci>
</apply>
<apply>
<times/>
<ci>k1f</ci>
<ci>k2f</ci>
<ci>k4f</ci>
</apply>
<apply>
<times/>
<ci>k2f</ci>
<ci>k3f</ci>
<ci>k4f</ci>
</apply>
<apply>
<times/>
<ci>k2f</ci>
<ci>k3f</ci>
<ci>k4r</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>P5</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>k4f</ci>
<ci>k1r</ci>
<ci>k3r</ci>
</apply>
<apply>
<times/>
<ci>k1r</ci>
<ci>k2r</ci>
<ci>k3r</ci>
</apply>
<apply>
<times/>
<ci>k1r</ci>
<ci>k2r</ci>
<ci>k4r</ci>
</apply>
<apply>
<times/>
<ci>k1r</ci>
<ci>k3r</ci>
<ci>k4r</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>P6</ci>
<apply>
<plus/>
<apply>
<times/>
<ci>k2f</ci>
<ci>k4f</ci>
<ci>k1r</ci>
</apply>
<apply>
<times/>
<ci>k2f</ci>
<ci>k1r</ci>
<ci>k4r</ci>
</apply>
</apply>
</apply>
<apply>
<eq/>
<ci>v</ci>
<apply>
<divide/>
<apply>
<times/>
<ci>E</ci>
<apply>
<minus/>
<apply>
<times/>
<ci>P1</ci>
<ci>q_Ao</ci>
</apply>
<apply>
<times/>
<ci>P2</ci>
<ci>q_Ai</ci>
</apply>
</apply>
</apply>
<apply>
<plus/>
<ci>P3</ci>
<apply>
<times/>
<ci>P4</ci>
<ci>q_Ao</ci>
</apply>
<apply>
<times/>
<ci>P5</ci>
<ci>q_Ai</ci>
</apply>
<apply>
<times/>
<ci>P6</ci>
<ci>q_Ai</ci>
<ci>q_Ao</ci>
</apply>
</apply>
</apply>
</apply>
<apply>
<eq/>
<apply>
<diff/>
<bvar>
<ci>t</ci>
</bvar>
<ci>X</ci>
</apply>
<cn cellml:units="dimensionless">0</cn>
</apply>
</math>
</component>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#">
<rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="#main.v">
<bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" rdf:resource="https://identifiers.org/opb/OPB_00592" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"/>
</rdf:Description>
<rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" description="source" rdf:about="#main.q_Ai">
<semsim:isComputationalComponentFor xmlns:semsim="http://www.bhi.washington.edu/SemSim#">
<rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="#property_0">
<semsim:physicalPropertyOf xmlns:semsim="http://www.bhi.washington.edu/SemSim#">
<rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="#entity_0">
<ro:part_of xmlns:ro="http://www.obofoundry.org/ro/ro.owl#">
<rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="#entity_1">
<semsim:hasPhysicalDefinition xmlns:semsim="http://www.bhi.washington.edu/SemSim#" rdf:resource="http://identifiers.org/fma/FMA:260693" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"/>
</rdf:Description>
</ro:part_of>
<semsim:hasPhysicalDefinition xmlns:semsim="http://www.bhi.washington.edu/SemSim#" rdf:resource="https://identifiers.org/chebi/CHEBI:17634" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"/>
</rdf:Description>
</semsim:physicalPropertyOf>
<semsim:hasPhysicalDefinition xmlns:semsim="http://www.bhi.washington.edu/SemSim#" rdf:resource="https://identifiers.org/opb/OPB_00340" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"/>
</rdf:Description>
</semsim:isComputationalComponentFor>
</rdf:Description>
<rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" modelName="main" rdf:about="#metaid0"/>
<rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" description="sink" rdf:about="#main.q_Ao">
<semsim:isComputationalComponentFor xmlns:semsim="http://www.bhi.washington.edu/SemSim#">
<rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="#property_1">
<semsim:physicalPropertyOf xmlns:semsim="http://www.bhi.washington.edu/SemSim#">
<rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="#entity_2">
<ro:part_of xmlns:ro="http://www.obofoundry.org/ro/ro.owl#">
<rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="#entity_3">
<semsim:hasPhysicalDefinition xmlns:semsim="http://www.bhi.washington.edu/SemSim#" rdf:resource="http://identifiers.org/fma/FMA:70022" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"/>
</rdf:Description>
</ro:part_of>
<semsim:hasPhysicalDefinition xmlns:semsim="http://www.bhi.washington.edu/SemSim#" rdf:resource="https://identifiers.org/chebi/CHEBI:190513" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"/>
</rdf:Description>
</semsim:physicalPropertyOf>
<semsim:hasPhysicalDefinition xmlns:semsim="http://www.bhi.washington.edu/SemSim#" rdf:resource="https://identifiers.org/opb/OPB_00340" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"/>
</rdf:Description>
</semsim:isComputationalComponentFor>
</rdf:Description>
<rdf:Description xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:about="#main.E">
<bqbiol:is xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" rdf:resource="https://identifiers.org/chebi/CHEBI:24430" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"/>
</rdf:Description>
</rdf:RDF>
</model>
